Transcript: MIR100HG:16

Basic information

LNCipedia transcript ID: MIR100HG:16 
HGNC Gene Symbol: MIR100HG    
HGNC Full Gene Name: mir-100-let-7a-2-mir-125b-1 cluster host gene
Ensembl Gene ID: ENSG00000255248
Ensembl Transcript ID: ENST00000534195
Location (hg38): chr11:122091254-122105169
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 586 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000534195.1; RP11-166D19.1-010; OTTHUMT00000387649.1; NONHSAT024783
Alternative gene names: ENSG00000255248.2; RP11-166D19.1; OTTHUMG00000166058.1; ENSG00000255248.6; AGD1; lncRNA-N2; ENSG00000255248.7; MIR100HG; linc-NeD125


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.378 non-coding 
CPAT coding probability 5.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR100HG:16 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  2. Emmrich (2014), LincRNAs MONC and MIR100HG act as oncogenes in acute megakaryoblastic leukemia., Mol. Cancer
  3. Zhao (2010), Evaluation of BLID and LOC399959 as candidate genes for high myopia in the Chinese Han population., Mol. Vis.
  4. Kikuchi (2009), Transcripts of unknown function in multiple-signaling pathways involved in human stem cell differentiation., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BLID-1:3
4.0 MIR100HG:16
4.1 MIR100HG:16
5.0 MIR100HG:16
5.1 MIR100HG:16
5.2 MIR100HG:16