Transcript: MIR100HG:9

Basic information

LNCipedia transcript ID: MIR100HG:9 
LNCipedia gene ID: MIR100HG
RefSeq ID: NR_024430
Location (hg38): chr11:122089103-122203062
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3082 bp
Exons: 4
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT024777; NR_024430; NR_024430.1
Alternative gene names: AGD1; lncRNA-N2; linc-NeD125; MIR100HG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.378 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR100HG:9 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  2. Emmrich (2014), LincRNAs MONC and MIR100HG act as oncogenes in acute megakaryoblastic leukemia., Mol. Cancer
  3. Zhao (2010), Evaluation of BLID and LOC399959 as candidate genes for high myopia in the Chinese Han population., Mol. Vis.
  4. Kikuchi (2009), Transcripts of unknown function in multiple-signaling pathways involved in human stem cell differentiation., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BLID-1:22
4.0 MIR100HG:9
4.1 MIR100HG:9
5.0 MIR100HG:9
5.1 MIR100HG:9
5.2 MIR100HG:9