Transcript: MIR1302-2HG:5

Basic information

LNCipedia transcript ID: MIR1302-2HG:5 
HGNC Gene Symbol: MIR1302-2HG    
HGNC Full Gene Name: MIR1302-2 host gene
Ensembl Gene ID: ENSG00000243485
Ensembl Transcript ID: ENST00000469289
Location (hg38): chr1:30267-31109
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 535 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000469289.1; MIR1302-10-002; OTTHUMT00000002841.2; NONHSAT000012
Alternative gene names: ENSG00000243485.1; MIR1302-10; OTTHUMG00000000959.2; ENSG00000243485.2; ENSG00000243485.3; RP11-34P13.3; ENSG00000243485.4; MIR1302-2; ENSG00000243485.5; MIR1302-2HG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.5331 non-coding 
CPAT coding probability 1.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR1302-2HG:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR4F5-1:2
4.0 lnc-OR4F5-1:2
4.1 lnc-OR4F5-1:2
5.0 lnc-OR4F5-1:2
5.1 MIR1302-2HG:3
5.2 MIR1302-2HG:5