Transcript: MIR155HG:1

Basic information

LNCipedia transcript ID: MIR155HG:1 
HGNC Gene Symbol: MIR155HG    
HGNC Full Gene Name: MIR155 host gene
Ensembl Gene ID: ENSG00000234883
Ensembl Transcript ID: ENST00000456917
Location (hg38): chr21:25561909-25575168
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1600 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000456917; ENST00000456917.1; MIR155HG-001; OTTHUMT00000171187.1; NONHSAT081498
Alternative gene names: ENSG00000234883; MIR155HG; ENSG00000234883.1; OTTHUMG00000078367.1; ENSG00000234883.2; ENSG00000234883.3; BIC; NCRNA00172; ENSG00000234883.4; ENSG00000234883.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.1132 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR155HG:1 no no no no

Available literature

  1. Liu (2015), Altered expression of long non-coding RNAs during genotoxic stress-induced cell death in human glioma cells., J. Neurooncol.
  2. Elton (2013), Regulation of the MIR155 host gene in physiological and pathological processes., Gene
  3. Vargova (2011), MYB transcriptionally regulates the miR-155 host gene in chronic lymphocytic leukemia., Blood


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-JAM2-2:1
3.1 lnc-JAM2-2:1
4.0 MIR155HG:1
4.1 MIR155HG:1
5.0 MIR155HG:1
5.1 MIR155HG:1
5.2 MIR155HG:1