Transcript: MIR17HG:3

Basic information

LNCipedia transcript ID: MIR17HG:3 
LNCipedia gene ID: MIR17HG
RefSeq ID: NR_027350
Location (hg38): chr13:91347820-91354575
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5018 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT034665; NR_027350; NR_027350.1
Alternative gene names: FLJ14178; MIRH1; MIHG1; NCRNA00048; miR-17-92; LINC00048; MIR17HG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.1744 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR17HG:3 no no no no

Available literature

  1. Hart (2014), MYC regulates the non-coding transcriptome., Oncotarget
  2. Tagawa (2013), Role of microRNA in the pathogenesis of malignant lymphoma., Cancer Sci.
  3. Williamson (2007), Role for amplification and expression of glypican-5 in rhabdomyosarcoma., Cancer Res.
  4. Hayashita (2005), A polycistronic microRNA cluster, miR-17-92, is overexpressed in human lung cancers and enhances cell proliferation., Cancer Res.
  5. He (2005), A microRNA polycistron as a potential human oncogene., Nature
  6. Ota (2004), Identification and characterization of a novel gene, C13orf25, as a target for 13q31-q32 amplification in malignant lymphoma., Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPC5-1:9
4.0 MIR17HG:3
4.1 MIR17HG:3
5.0 MIR17HG:3
5.1 MIR17HG:3
5.2 MIR17HG:3