Transcript: MIR17HG:5

Basic information

LNCipedia transcript ID: MIR17HG:5 
HGNC Gene Symbol: MIR17HG    
HGNC Full Gene Name: miR-17-92a-1 cluster host gene
Ensembl Gene ID: ENSG00000215417
Ensembl Transcript ID: ENST00000581816
Location (hg38): chr13:91347942-91352096
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2032 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000581816.1; MIR17HG-003; OTTHUMT00000442498.1; NONHSAT034667
Alternative gene names: ENSG00000215417.5; MIR17HG; OTTHUMG00000017195.3; ENSG00000215417.6; ENSG00000215417.10; FLJ14178; MIRH1; MIHG1; NCRNA00048; miR-17-92; LINC00048; ENSG00000215417.11; ENSG00000215417.12


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.1744 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR17HG:5 no no no no

Available literature

  1. Hart (2014), MYC regulates the non-coding transcriptome., Oncotarget
  2. Tagawa (2013), Role of microRNA in the pathogenesis of malignant lymphoma., Cancer Sci.
  3. Williamson (2007), Role for amplification and expression of glypican-5 in rhabdomyosarcoma., Cancer Res.
  4. Hayashita (2005), A polycistronic microRNA cluster, miR-17-92, is overexpressed in human lung cancers and enhances cell proliferation., Cancer Res.
  5. He (2005), A microRNA polycistron as a potential human oncogene., Nature
  6. Ota (2004), Identification and characterization of a novel gene, C13orf25, as a target for 13q31-q32 amplification in malignant lymphoma., Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPC5-1:3
4.0 MIR17HG:5
4.1 MIR17HG:5
5.0 MIR17HG:5
5.1 MIR17HG:5
5.2 MIR17HG:5