Transcript: MIR200CHG:11

Basic information

LNCipedia transcript ID: MIR200CHG:11 
LNCipedia gene ID: MIR200CHG
Location (hg38): chr12:6963212-6965031
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 952 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000257084.1|ENCT00000087517.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -113.9602 non-coding 
CPAT coding probability 1.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR200CHG:11 no no no no

Available literature

  1. Wang (2017), Characterization of long noncoding RNA and messenger RNA signatures in melanoma tumorigenesis and metastasis., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PTPN6-1:6
5.0 lnc-PTPN6-1:6
5.1 MIR200CHG:4
5.2 MIR200CHG:11