Transcript: MIR200CHG:14

Basic information

LNCipedia transcript ID: MIR200CHG:14 
LNCipedia gene ID: MIR200CHG
Ensembl Gene ID: ENSG00000271969
Ensembl Transcript ID: ENST00000606539
Location (hg38): chr12:6964949-6965382
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 434 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000606539.1
Alternative gene names: ENSG00000271969.1; U47924.29; U47924.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -115.364 non-coding 
CPAT coding probability 3.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR200CHG:14 yes no no no

Available literature

  1. Wang (2017), Characterization of long noncoding RNA and messenger RNA signatures in melanoma tumorigenesis and metastasis., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTPN6-1:3
4.0 lnc-PTPN6-1:3
4.1 lnc-PTPN6-1:3
5.0 lnc-PTPN6-1:3
5.1 MIR200CHG:8
5.2 MIR200CHG:14