Transcript: MIR2052HG:3

Basic information

LNCipedia transcript ID: MIR2052HG:3 
HGNC Gene Symbol: MIR2052HG    
HGNC Full Gene Name: MIR2052 host gene
Ensembl Gene ID: ENSG00000254349
Ensembl Transcript ID: ENST00000523118
RefSeq ID: NR_033830
Location (hg38): chr8:74599866-74758352
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2125 bp
Exons: 6
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_033830; ENST00000523118.5; NR_033830.1
Alternative gene names: ENSG00000254349.5; MIR2052HG;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.4668 non-coding 
CPAT coding probability 5.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR2052HG:3 no no no no

Available literature

  1. Ingle (2016), Genetic Polymorphisms in the Long Noncoding RNA MIR2052HG Offer a Pharmacogenomic Basis for the Response of Breast Cancer Patients to Aromatase Inhibitor Therapy., Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PI15-3:1
4.0 MIR2052HG:3
4.1 MIR2052HG:3
5.0 MIR2052HG:3
5.1 MIR2052HG:3
5.2 MIR2052HG:3