Transcript: MIR22HG:10

Basic information

LNCipedia transcript ID: MIR22HG:10 
HGNC Gene Symbol: MIR22HG    
HGNC Full Gene Name: MIR22 host gene
Ensembl Gene ID: ENSG00000186594
Ensembl Transcript ID: ENST00000573127
Location (hg38): chr17:1712361-1716211
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 899 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000573127.1; MIR22HG-004; OTTHUMT00000438301.1; NONHSAT144862; ENST00000573127.5
Alternative gene names: ENSG00000186594.6; MIR22HG; OTTHUMG00000132197.4; ENSG00000186594.8; ENSG00000186594.12; MGC14376; DKFZp686O06159; ENSG00000186594.13; ENSG00000186594.14


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -181.1815 non-coding 
CPAT coding probability 3.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR22HG:10 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget
  2. Wang (2015), Genome-scale long noncoding RNA expression pattern in squamous cell lung cancer., Sci Rep
  3. Tani (2014), Long non-coding RNAs as surrogate indicators for chemical stress responses in human-induced pluripotent stem cells., PLoS ONE
  4. Tani (2013), Identification of short-lived long non-coding RNAs as surrogate indicators for chemical stress response., Biochem. Biophys. Res. Commun.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TLCD2-1:7
4.0 MIR22HG:10
4.1 MIR22HG:10
5.0 MIR22HG:10
5.1 MIR22HG:10
5.2 MIR22HG:10