Transcript: MIR22HG:54

Basic information

LNCipedia transcript ID: MIR22HG:54 
LNCipedia gene ID: MIR22HG
Location (hg38): chr17:1710720-1714450
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3375 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000186594.8|ENCT00000179745.1
Alternative gene names: MGC14376; DKFZp686O06159


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -181.1815 non-coding 
CPAT coding probability 3.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR22HG:54 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget
  2. Wang (2015), Genome-scale long noncoding RNA expression pattern in squamous cell lung cancer., Sci Rep
  3. Tani (2014), Long non-coding RNAs as surrogate indicators for chemical stress responses in human-induced pluripotent stem cells., PLoS ONE
  4. Tani (2013), Identification of short-lived long non-coding RNAs as surrogate indicators for chemical stress response., Biochem. Biophys. Res. Commun.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 MIR22HG:54
5.0 MIR22HG:54
5.1 MIR22HG:54
5.2 MIR22HG:54