Transcript: MIR29B2CHG:51

Basic information

LNCipedia transcript ID: MIR29B2CHG:51 
LNCipedia gene ID: MIR29B2CHG
Location (hg38): chr1:207873795-207879073
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 565 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000718; ENST00000435542; ENST00000435542.1; RP11-328D5.1-001; OTTHUMT00000088900.1; NONHSAT009155
Alternative gene names: XLOC_001182; linc-YOD1-3; ENSG00000226202; RP11-328D5.1; ENSG00000226202.1; OTTHUMG00000036552.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -46.6464 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR29B2CHG:51 no no no no

Available literature

  1. Ota (2004), Complete sequencing and characterization of 21,243 full-length human cDNAs., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1orf132-2:1
3.1 lnc-C1orf132-2:1
4.0 lnc-C1orf132-2:1
4.1 lnc-C1orf132-1:11
5.0 lnc-C1orf132-1:11
5.1 MIR29B2CHG:4
5.2 MIR29B2CHG:51