Transcript: MIR3142HG:2

Basic information

LNCipedia transcript ID: MIR3142HG:2 
HGNC Gene Symbol: MIR3142HG    
HGNC Full Gene Name: MIR3142 host gene
Ensembl Gene ID: ENSG00000253522
Ensembl Transcript ID: ENST00000517927
Location (hg38): chr5:160468268-160487426
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2301 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517927; ENST00000517927.1; hsa-mir-146a.1-001; OTTHUMT00000374137.1
Alternative gene names: ENSG00000253522; CTC-231O11.1; ENSG00000253522.1; hsa-mir-146a; OTTHUMG00000163553.1; ENSG00000253522.2; MIR146A; ENSG00000253522.3; MIR3142HG; ; ENSG00000253522.4; ENSG00000253522.5; ENSG00000253522.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.4678 non-coding 
CPAT coding probability 8.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR3142HG:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTTG1-1:1
3.1 lnc-PTTG1-1:1
4.0 MIR3142HG:2
4.1 MIR3142HG:2
5.0 MIR3142HG:2
5.1 MIR3142HG:2
5.2 MIR3142HG:2