Transcript: MIR31HG:3

Basic information

LNCipedia transcript ID: MIR31HG:3 
HGNC Gene Symbol: MIR31HG    
HGNC Full Gene Name: MIR31 host gene
Ensembl Gene ID: ENSG00000171889
Ensembl Transcript ID: ENST00000304425
Location (hg38): chr9:21455642-21559669
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 745 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000304425; ENST00000304425.3; MIR31HG-001; OTTHUMT00000051910.1
Alternative gene names: ENSG00000171889; RP11-354P17.9; ENSG00000171889.3; MIR31HG; OTTHUMG00000019681.1; LOC554202; hsa-lnc-31


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.3541 non-coding 
CPAT coding probability 5.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR31HG:3 no no no no

Available literature

  1. Nie (2016), Decreased long noncoding RNA MIR31HG is correlated with poor prognosis and contributes to cell proliferation in gastric cancer., Tumour Biol.
  2. Ballarino (2015), Novel long noncoding RNAs (lncRNAs) in myogenesis: a miR-31 overlapping lncRNA transcript controls myoblast differentiation., Mol. Cell. Biol.
  3. Montes (2015), The lncRNA MIR31HG regulates p16(INK4A) expression to modulate senescence., Nat Commun
  4. Na (2015), Long non-coding RNA UCA1 contributes to the progression of prostate cancer and regulates proliferation through KLF4-KRT6/13 signaling pathway., Int J Clin Exp Med
  5. Pei (2015), Notch-1 promotes breast cancer cells proliferation by regulating LncRNA GAS5., Int J Clin Exp Med
  6. Tantai (2015), Combined identification of long non-coding RNA XIST and HIF1A-AS1 in serum as an effective screening for non-small cell lung cancer., Int J Clin Exp Pathol
  7. Wang (2015), Upregulated lncRNA-UCA1 contributes to progression of lung cancer and is closely related to clinical diagnosis as a predictive biomarker in plasma., Int J Clin Exp Med
  8. Shi (2014), Long non-coding RNA Loc554202 regulates proliferation and migration in breast cancer cells., Biochem. Biophys. Res. Commun.
  9. Augoff (2012), miR-31 and its host gene lncRNA LOC554202 are regulated by promoter hypermethylation in triple-negative breast cancer., Mol. Cancer
  10. Schmitz (2004), A novel class of mammalian-specific tailless retropseudogenes., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IFNE-1:1
3.1 lnc-IFNE-1:1
4.0 MIR31HG:3
4.1 MIR31HG:3
5.0 MIR31HG:3
5.1 MIR31HG:3
5.2 MIR31HG:3