Transcript: MIR3663HG:1

Basic information

LNCipedia transcript ID: MIR3663HG:1 
HGNC Gene Symbol: MIR3663HG    
HGNC Full Gene Name: MIR3663 host gene
Ensembl Gene ID: ENSG00000234474
Ensembl Transcript ID: ENST00000419373
Location (hg38): chr10:117158656-117169059
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2385 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT016507; ENST00000419373.2
Alternative gene names: ENSG00000234474.2; RP11-501J20.2; MIR3663HG;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.4724 non-coding 
CPAT coding probability 3.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR3663HG:1 no no no no

Available literature

  1. Ma (2015), Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes., Nat. Methods


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VAX1-1:7
4.0 MIR3663HG:1
4.1 MIR3663HG:1
5.0 MIR3663HG:1
5.1 MIR3663HG:1
5.2 MIR3663HG:1