Transcript: MIR3663HG:4

Basic information

LNCipedia transcript ID: MIR3663HG:4 
LNCipedia gene ID: MIR3663HG
Location (hg38): chr10:117153553-117169047
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 526 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018612; NONHSAT016505
Alternative gene names: XLOC_008959; linc-VAX1-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -117.0837 non-coding 
CPAT coding probability 1.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR3663HG:4 no no no no

Available literature

  1. Ma (2015), Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes., Nat. Methods


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VAX1-1:2
3.1 lnc-VAX1-1:2
4.0 MIR3663HG:4
4.1 MIR3663HG:4
5.0 MIR3663HG:4
5.1 MIR3663HG:4
5.2 MIR3663HG:4