Transcript: MIR3663HG:5

Basic information

LNCipedia transcript ID: MIR3663HG:5 
LNCipedia gene ID: MIR3663HG
Location (hg38): chr10:117144580-117169047
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 666 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018610; NONHSAT016502
Alternative gene names: XLOC_008959; linc-VAX1-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -117.0837 non-coding 
CPAT coding probability 0.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR3663HG:5 no no no no

Available literature

  1. Ma (2015), Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes., Nat. Methods


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VAX1-1:3
3.1 lnc-VAX1-1:3
4.0 MIR3663HG:5
4.1 MIR3663HG:5
5.0 MIR3663HG:5
5.1 MIR3663HG:5
5.2 MIR3663HG:5