Transcript: MIR3663HG:7

Basic information

LNCipedia transcript ID: MIR3663HG:7 
LNCipedia gene ID: MIR3663HG
Location (hg38): chr10:117145135-117169042
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 630 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018611; NONHSAT016503
Alternative gene names: XLOC_008959; linc-VAX1-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -117.0837 non-coding 
CPAT coding probability 0.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR3663HG:7 no no no no

Available literature

  1. Ma (2015), Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes., Nat. Methods


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VAX1-1:5
3.1 lnc-VAX1-1:5
4.0 MIR3663HG:7
4.1 MIR3663HG:7
5.0 MIR3663HG:7
5.1 MIR3663HG:7
5.2 MIR3663HG:7