Transcript: MIR3936HG:16

Basic information

LNCipedia transcript ID: MIR3936HG:16 
LNCipedia gene ID: MIR3936HG
Location (hg38): chr5:132364222-132369648
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1779 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000457998.1; AC034220.3-003; OTTHUMT00000132652.1; NONHSAT103745
Alternative gene names: ENSG00000233006.1; AC034220.3; OTTHUMG00000059646.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.3703 non-coding 
CPAT coding probability 0.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR3936HG:16 no no no no

Available literature

  1. He (2016), Epstein-Barr virus-encoded miR-BART6-3p inhibits cancer cell metastasis and invasion by targeting long non-coding RNA LOC553103., Cell Death Dis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-P4HA2-2:2
4.0 lnc-P4HA2-2:2
4.1 lnc-P4HA2-2:2
5.0 lnc-P4HA2-2:2
5.1 MIR3936HG:6
5.2 MIR3936HG:16