Transcript: MIR3936HG:21

Basic information

LNCipedia transcript ID: MIR3936HG:21 
LNCipedia gene ID: MIR3936HG
Location (hg38): chr5:132344726-132351558
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 6833 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1785:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 17.5782 non-coding 
CPAT coding probability 33.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR3936HG:21 no no no no

Available literature

  1. He (2016), Epstein-Barr virus-encoded miR-BART6-3p inhibits cancer cell metastasis and invasion by targeting long non-coding RNA LOC553103., Cell Death Dis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-P4HA2-2:11
4.1 lnc-P4HA2-2:11
5.0 lnc-P4HA2-2:11
5.1 MIR3936HG:12
5.2 MIR3936HG:21