Transcript: MIR4300HG:6

Basic information

LNCipedia transcript ID: MIR4300HG:6 
HGNC Gene Symbol: MIR4300HG    
HGNC Full Gene Name: MIR4300 host gene
Ensembl Gene ID: ENSG00000245832
Ensembl Transcript ID: ENST00000530896
Location (hg38): chr11:81879851-82100043
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 530 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000530896; ENST00000530896.1; RP11-179A16.1-002; OTTHUMT00000391622.1; NONHSAT023335; FPKM1_group_4997_transcript_1; ENST00000530896.5
Alternative gene names: ENSG00000245832; RP11-179A16.1; ENSG00000245832.2; OTTHUMG00000166867.1; ENSG00000245832.6; MIR4300HG;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.7036 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR4300HG:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM181B-2:3
3.1 lnc-FAM181B-2:3
4.0 MIR4300HG:6
4.1 MIR4300HG:6
5.0 MIR4300HG:6
5.1 MIR4300HG:6
5.2 MIR4300HG:6