Transcript: MIR4713HG:7

Basic information

LNCipedia transcript ID: MIR4713HG:7 
HGNC Gene Symbol: MIR4713HG    
HGNC Full Gene Name: MIR4713 host gene
Ensembl Gene ID: ENSG00000259240
Ensembl Transcript ID: ENST00000559909
Location (hg38): chr15:51037488-51293912
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 561 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000559909.1; RP11-108K3.1-001; OTTHUMT00000418684.1; NONHSAT042449
Alternative gene names: ENSG00000259240.1; RP11-108K3.1; OTTHUMG00000172467.1; MIR4713HG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.8834 non-coding 
CPAT coding probability 3.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR4713HG:7 no no no no

Available literature

  1. Zeng (2017), Comprehensive investigation of a novel differentially expressed lncRNA expression profile signature to assess the survival of patients with colorectal adenocarcinoma., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP4E1-2:1
4.0 lnc-AP4E1-2:1
4.1 lnc-AP4E1-2:1
5.0 lnc-AP4E1-2:1
5.1 MIR4713HG:2
5.2 MIR4713HG:7