Transcript: MIR503HG:3

Basic information

LNCipedia transcript ID: MIR503HG:3 
HGNC Gene Symbol: MIR503HG    
HGNC Full Gene Name: MIR503 host gene
Ensembl Gene ID: ENSG00000223749
Ensembl Transcript ID: ENST00000440570
Location (hg38): chrX:134543337-134546632
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 760 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000440570; ENST00000440570.1; AC004383.4-002; OTTHUMT00000058370.1; NONHSAT138621; ENST00000440570.5
Alternative gene names: ENSG00000223749; AC004383.4; ENSG00000223749.2; OTTHUMG00000022455.1; ENSG00000223749.3; MIR503HG; ENSG00000223749.7; MGC16121; H19X; ENSG00000223749.8; ENSG00000223749.9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.997 non-coding 
CPAT coding probability 2.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR503HG:3 no no no no

Available literature

  1. Muys (2016), Placenta-Enriched LincRNAs MIR503HG and LINC00629 Decrease Migration and Invasion Potential of JEG-3 Cell Line., PLoS ONE
  2. Fiedler (2015), Development of Long Noncoding RNA-Based Strategies to Modulate Tissue Vascularization., J. Am. Coll. Cardiol.
  3. Necsulea (2014), The evolution of lncRNA repertoires and expression patterns in tetrapods., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PLAC1-1:1
3.1 lnc-PLAC1-1:1
4.0 MIR503HG:3
4.1 MIR503HG:3
5.0 MIR503HG:3
5.1 MIR503HG:3
5.2 MIR503HG:3