Transcript: MIR548A1HG:6

Basic information

LNCipedia transcript ID: MIR548A1HG:6 
HGNC Gene Symbol: MIR548A1HG    
HGNC Full Gene Name: MIR548A1 host gene
Ensembl Gene ID: ENSG00000283408
Ensembl Transcript ID: ENST00000636739
Location (hg38): chr6:18522739-18536196
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 558 bp
Exons: 5
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000636739.1
Alternative gene names: ENSG00000283408.1; RP1-242N11.1; MIR548A1HG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 9.6587 non-coding 
CPAT coding probability 13.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR548A1HG:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RNF144B-1:3
5.0 lnc-RNF144B-1:3
5.1 MIR548A1HG:2
5.2 MIR548A1HG:6