Transcript: MIR548XHG:2

Basic information

LNCipedia transcript ID: MIR548XHG:2 
LNCipedia gene ID: MIR548XHG
RefSeq ID: NR_109925
Location (hg38): chr21:18561265-18759812
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 662 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109925; NR_109925.1
Alternative gene names: ; MIR548XHG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.8352 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR548XHG:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMPRSS15-3:4
4.0 MIR548XHG:2
4.1 MIR548XHG:2
5.0 MIR548XHG:2
5.1 MIR548XHG:2
5.2 MIR548XHG:2