Transcript: MIR548XHG:3

Basic information

LNCipedia transcript ID: MIR548XHG:3 
HGNC Gene Symbol: MIR548XHG    
HGNC Full Gene Name: MIR548X host gene
Ensembl Gene ID: ENSG00000224141
Ensembl Transcript ID: ENST00000355189
Location (hg38): chr21:18561615-18759804
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 673 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000355189; ENST00000355189.3; AL109763.2-002; OTTHUMT00000158277.1; NONHSAT081312; ENST00000355189.7
Alternative gene names: ENSG00000224141; AL109763.2; ENSG00000224141.1; OTTHUMG00000074544.1; ENSG00000224141.5; MIR548XHG;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -147.5288 non-coding 
CPAT coding probability 20.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR548XHG:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMPRSS15-3:2
3.1 lnc-TMPRSS15-3:2
4.0 MIR548XHG:3
4.1 MIR548XHG:3
5.0 MIR548XHG:3
5.1 MIR548XHG:3
5.2 MIR548XHG:3