Transcript: MIR5689HG:1

Basic information

LNCipedia transcript ID: MIR5689HG:1 
HGNC Gene Symbol: MIR5689HG    
HGNC Full Gene Name: MIR5689 host gene
Ensembl Gene ID: ENSG00000229401
Ensembl Transcript ID: ENST00000449333
Location (hg38): chr6:10434316-10452247
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 434 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011264; ENST00000449333; ENST00000449333.1; RP1-290I10.7-001; OTTHUMT00000039813.1; NONHSAT107689
Alternative gene names: XLOC_005167; linc-GCNT2-1; ENSG00000229401; RP1-290I10.7; ENSG00000229401.1; OTTHUMG00000014234.1; MIR5689HG;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.9323 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR5689HG:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GCNT2-1:1
3.1 lnc-GCNT2-1:1
4.0 MIR5689HG:1
4.1 MIR5689HG:1
5.0 MIR5689HG:1
5.1 MIR5689HG:1
5.2 MIR5689HG:1