Transcript: MIR583HG:29

Basic information

LNCipedia transcript ID: MIR583HG:29 
LNCipedia gene ID: MIR583HG
Location (hg38): chr5:95962001-96634516
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 539 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000502645.1; CTD-2337A12.1-001; OTTHUMT00000370533.1; NONHSAT102878
Alternative gene names: ENSG00000251314.1; CTD-2337A12.1; OTTHUMG00000162821.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -167.022 non-coding 
CPAT coding probability 8.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR583HG:29 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CAST-4:1
4.0 lnc-CAST-4:1
4.1 lnc-CAST-4:1
5.0 lnc-CAST-4:1
5.1 MIR583HG:5
5.2 MIR583HG:29