Transcript: MIR646HG:17

Basic information

LNCipedia transcript ID: MIR646HG:17 
HGNC Gene Symbol: MIR646HG    
HGNC Full Gene Name: MIR646 host gene
Ensembl Gene ID: ENSG00000228340
Ensembl Transcript ID: ENST00000432910
RefSeq ID: NR_046099
Location (hg38): chr20:60138492-60322256
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2043 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000432910; ENST00000432910.1; RP5-1043L13.1-001; OTTHUMT00000079947.1; NONHSAT080648; NR_046099; ENST00000432910.5; NR_046099.1
Alternative gene names: ENSG00000228340; RP5-1043L13.1; ENSG00000228340.1; OTTHUMG00000032883.1; ENSG00000228340.5; MIR646HG;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.3357 non-coding 
CPAT coding probability 7.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR646HG:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C20orf197-1:8
3.1 lnc-C20orf197-3:8
4.0 MIR646HG:17
4.1 MIR646HG:17
5.0 MIR646HG:17
5.1 MIR646HG:17
5.2 MIR646HG:17