Transcript: MIR7-3HG:2

Basic information

LNCipedia transcript ID: MIR7-3HG:2 
LNCipedia gene ID: MIR7-3HG
RefSeq ID: NR_027148
Location (hg38): chr19:4769105-4772556
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 768 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT060641; NR_027148; NR_027148.1
Alternative gene names: PGSF1; PGSF1a; PGSF1b; Huh7; uc002mbe.2; MIR7-3HG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.4899 non-coding 
CPAT coding probability 35.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR7-3HG:2 no no no no

Available literature

  1. Yang (2013), Induction of the liver cancer-down-regulated long noncoding RNA uc002mbe.2 mediates trichostatin-induced apoptosis of liver cancer cells., Biochem. Pharmacol.
  2. Tanaka (2002), Expression profile of active genes in the human pituitary gland., J. Mol. Endocrinol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FEM1A-1:3
4.0 MIR7-3HG:2
4.1 MIR7-3HG:2
5.0 MIR7-3HG:2
5.1 MIR7-3HG:2
5.2 MIR7-3HG:2