Transcript: MIR7-3HG:25

Basic information

LNCipedia transcript ID: MIR7-3HG:25 
LNCipedia gene ID: MIR7-3HG
Location (hg38): chr19:4769133-4772533
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 886 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000176840.7|ENST00000586721.1
Alternative gene names: PGSF1; PGSF1a; PGSF1b; Huh7; uc002mbe.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -112.4899 non-coding 
CPAT coding probability 6.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR7-3HG:25 no no no no

Available literature

  1. Yang (2013), Induction of the liver cancer-down-regulated long noncoding RNA uc002mbe.2 mediates trichostatin-induced apoptosis of liver cancer cells., Biochem. Pharmacol.
  2. Tanaka (2002), Expression profile of active genes in the human pituitary gland., J. Mol. Endocrinol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 MIR7-3HG:25
5.0 MIR7-3HG:25
5.1 MIR7-3HG:25
5.2 MIR7-3HG:25