Transcript: MIR7-3HG:6

Basic information

LNCipedia transcript ID: MIR7-3HG:6 
HGNC Gene Symbol: MIR7-3HG    
HGNC Full Gene Name: MIR7-3 host gene
Ensembl Gene ID: ENSG00000176840
Ensembl Transcript ID: ENST00000588711
Location (hg38): chr19:4769142-4772499
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 560 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT060644; ENST00000588711.1; ENST00000588711.5
Alternative gene names: ENSG00000176840.7; MIR7-3HG; ENSG00000176840.11; PGSF1; PGSF1a; PGSF1b; Huh7; uc002mbe.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.7628 non-coding 
CPAT coding probability 9.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR7-3HG:6 no no no no

Available literature

  1. Yang (2013), Induction of the liver cancer-down-regulated long noncoding RNA uc002mbe.2 mediates trichostatin-induced apoptosis of liver cancer cells., Biochem. Pharmacol.
  2. Tanaka (2002), Expression profile of active genes in the human pituitary gland., J. Mol. Endocrinol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FEM1A-1:6
4.0 MIR7-3HG:6
4.1 MIR7-3HG:6
5.0 MIR7-3HG:6
5.1 MIR7-3HG:6
5.2 MIR7-3HG:6