Transcript: MIR9-3HG:13

Basic information

LNCipedia transcript ID: MIR9-3HG:13 
LNCipedia gene ID: MIR9-3HG
Location (hg38): chr15:89377989-89398461
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3814 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023497; NONHSAT048294
Alternative gene names: XLOC_011345; linc-C15orf42-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 32.3199 non-coding 
CPAT coding probability 2.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR9-3HG:13 no no no no

Available literature

  1. Miano (2016), Luminal long non-coding RNAs regulated by estrogen receptor alpha in a ligand-independent manner show functional roles in breast cancer., Oncotarget
  2. Konermann (2015), Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FANCI-1:4
3.1 lnc-FANCI-2:8
4.0 MIR9-3HG:13
4.1 MIR9-3HG:13
5.0 MIR9-3HG:13
5.1 MIR9-3HG:13
5.2 MIR9-3HG:13