Transcript: MIR9-3HG:2

Basic information

LNCipedia transcript ID: MIR9-3HG:2 
LNCipedia gene ID: MIR9-3HG
Location (hg38): chr15:89361579-89395320
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1611 bp
Exons: 7
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000536780.2; CTD-2335A18.1-001; OTTHUMT00000416278.1
Alternative gene names: ENSG00000255571.2; CTD-2335A18.1; OTTHUMG00000171992.4; LINC00925;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -174.6844 non-coding 
CPAT coding probability 17.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR9-3HG:2 no no no no

Available literature

  1. Miano (2016), Luminal long non-coding RNAs regulated by estrogen receptor alpha in a ligand-independent manner show functional roles in breast cancer., Oncotarget
  2. Konermann (2015), Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FANCI-2:2
4.0 MIR9-3HG:2
4.1 MIR9-3HG:2
5.0 MIR9-3HG:2
5.1 MIR9-3HG:2
5.2 MIR9-3HG:2