Transcript: MIR9-3HG:9

Basic information

LNCipedia transcript ID: MIR9-3HG:9 
HGNC Gene Symbol: MIR9-3HG    
HGNC Full Gene Name: MIR9-3 host gene
Ensembl Gene ID: ENSG00000255571
Ensembl Transcript ID: ENST00000560663
Location (hg38): chr15:89369155-89387843
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 576 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560663.1; CTD-2335A18.1-005; OTTHUMT00000416282.1; NONHSAT048290; ENST00000560663.5
Alternative gene names: ENSG00000255571.2; CTD-2335A18.1; OTTHUMG00000171992.4; LINC00925; ENSG00000255571.6; MIR9-3HG; ; ENSG00000255571.7; ENSG00000255571.8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -892.4769 non-coding 
CPAT coding probability 14.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR9-3HG:9 no no no no

Available literature

  1. Miano (2016), Luminal long non-coding RNAs regulated by estrogen receptor alpha in a ligand-independent manner show functional roles in breast cancer., Oncotarget
  2. Konermann (2015), Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FANCI-2:6
4.0 MIR9-3HG:9
4.1 MIR9-3HG:9
5.0 MIR9-3HG:9
5.1 MIR9-3HG:9
5.2 MIR9-3HG:9