Transcript: MMP25-AS1:10

Basic information

LNCipedia transcript ID: MMP25-AS1:10 
LNCipedia gene ID: MMP25-AS1
Location (hg38): chr16:3051995-3059335
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1342 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT147927
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 75.4703 coding 
CPAT coding probability 13.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MMP25-AS1:10 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC64B-1:11
4.0 MMP25-AS1:10
4.1 MMP25-AS1:10
5.0 MMP25-AS1:10
5.1 MMP25-AS1:10
5.2 MMP25-AS1:10