Transcript: MMP25-AS1:11

Basic information

LNCipedia transcript ID: MMP25-AS1:11 
LNCipedia gene ID: MMP25-AS1
Location (hg38): chr16:3058189-3059319
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 838 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT147946
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.7225 non-coding 
CPAT coding probability 2.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MMP25-AS1:11 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC64B-1:15
4.0 MMP25-AS1:11
4.1 MMP25-AS1:11
5.0 MMP25-AS1:11
5.1 MMP25-AS1:11
5.2 MMP25-AS1:11