Transcript: MMP25-AS1:21

Basic information

LNCipedia transcript ID: MMP25-AS1:21 
HGNC Gene Symbol: MMP25-AS1    
HGNC Full Gene Name: MMP25 antisense RNA 1
Ensembl Gene ID: ENSG00000261971
Ensembl Transcript ID: ENST00000573878
Location (hg38): chr16:3053588-3057197
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 483 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000573878.1; RP11-473M20.7-008; OTTHUMT00000437110.1; NONHSAT147936; ENST00000573878.5
Alternative gene names: ENSG00000261971.1; RP11-473M20.7; OTTHUMG00000177474.1; ENSG00000261971.2; ENSG00000261971.6; MMP25-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 76.1244 coding 
CPAT coding probability 18.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MMP25-AS1:21 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC64B-1:7
4.0 MMP25-AS1:21
4.1 MMP25-AS1:21
5.0 MMP25-AS1:21
5.1 MMP25-AS1:21
5.2 MMP25-AS1:21