Transcript: MMP25-AS1:23

Basic information

LNCipedia transcript ID: MMP25-AS1:23 
LNCipedia gene ID: MMP25-AS1
Location (hg38): chr16:3053367-3056232
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2163 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000573130.1; RP11-473M20.7-003; OTTHUMT00000437108.1
Alternative gene names: ENSG00000261971.1; RP11-473M20.7; OTTHUMG00000177474.1; ENSG00000261971.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.3919 non-coding 
CPAT coding probability 98.91% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MMP25-AS1:23 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC64B-1:8
4.0 MMP25-AS1:23
4.1 MMP25-AS1:23
5.0 MMP25-AS1:23
5.1 MMP25-AS1:23
5.2 MMP25-AS1:23