Transcript: MMP25-AS1:5

Basic information

LNCipedia transcript ID: MMP25-AS1:5 
LNCipedia gene ID: MMP25-AS1
RefSeq ID: NR_123723
Location (hg38): chr16:3052125-3059370
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2339 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_123723; NR_123723.1
Alternative gene names: ; MMP25-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -8.7225 non-coding 
CPAT coding probability 49.18% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MMP25-AS1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC64B-1:25
4.0 MMP25-AS1:5
4.1 MMP25-AS1:5
5.0 MMP25-AS1:5
5.1 MMP25-AS1:5
5.2 MMP25-AS1:5