Transcript: MMP25-AS1:6

Basic information

LNCipedia transcript ID: MMP25-AS1:6 
HGNC Gene Symbol: MMP25-AS1    
HGNC Full Gene Name: MMP25 antisense RNA 1
Ensembl Gene ID: ENSG00000261971
Ensembl Transcript ID: ENST00000576250
Location (hg38): chr16:3051991-3059363
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 779 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000576250.1; RP11-473M20.7-001; OTTHUMT00000437107.1; NONHSAT147923; ENST00000576250.5
Alternative gene names: ENSG00000261971.1; RP11-473M20.7; OTTHUMG00000177474.1; ENSG00000261971.2; ENSG00000261971.6; MMP25-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.7225 non-coding 
CPAT coding probability 3.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MMP25-AS1:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC64B-1:2
4.0 MMP25-AS1:6
4.1 MMP25-AS1:6
5.0 MMP25-AS1:6
5.1 MMP25-AS1:6
5.2 MMP25-AS1:6