Transcript: MPPED2-AS1:10

Basic information

LNCipedia transcript ID: MPPED2-AS1:10 
LNCipedia gene ID: MPPED2-AS1
Location (hg38): chr11:30584136-30636595
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5058 bp
Exons: 6
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000254489.1|MICT00000056565.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
LEGAGGNR 90.9090909090909% sense-3
Lee translation initiation sites non-coding 
PhyloCSF score -37.0716 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MPPED2-AS1:10 yes no no no

Available literature

  1. Sepe (2018), The Long Non-Coding RNA <i>RP5-1024C24.1</i> and Its Associated-Gene <i>MPPED2</i> Are Down-Regulated in Human Thyroid Neoplasias and Act as Tumour Suppressors., Cancers (Basel)


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C11orf46-2:5
5.0 lnc-C11orf46-2:5
5.1 MPPED2-AS1:5
5.2 MPPED2-AS1:10