Transcript: MPPED2-AS1:7

Basic information

LNCipedia transcript ID: MPPED2-AS1:7 
HGNC Gene Symbol: MPPED2-AS1    
HGNC Full Gene Name: MPPED2 antisense RNA 1
Ensembl Gene ID: ENSG00000254489
Ensembl Transcript ID: ENST00000531002
Location (hg38): chr11:30584130-30630508
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 541 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000531002.1; RP5-1024C24.1-002; OTTHUMT00000388162.1; NONHSAT018595
Alternative gene names: ENSG00000254489.1; RP5-1024C24.1; OTTHUMG00000166160.1; AL136088.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -237.0193 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MPPED2-AS1:7 yes no no no

Available literature

  1. Sepe (2018), The Long Non-Coding RNA <i>RP5-1024C24.1</i> and Its Associated-Gene <i>MPPED2</i> Are Down-Regulated in Human Thyroid Neoplasias and Act as Tumour Suppressors., Cancers (Basel)


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C11orf46-2:1
4.0 lnc-C11orf46-2:1
4.1 lnc-C11orf46-2:1
5.0 lnc-C11orf46-2:1
5.1 MPPED2-AS1:2
5.2 MPPED2-AS1:7