Transcript: MPPED2-AS1:9

Basic information

LNCipedia transcript ID: MPPED2-AS1:9 
LNCipedia gene ID: MPPED2-AS1
Location (hg38): chr11:30584136-30630508
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 535 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000254489.1|ENST00000531002.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -237.0193 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MPPED2-AS1:9 yes no no no

Available literature

  1. Sepe (2018), The Long Non-Coding RNA <i>RP5-1024C24.1</i> and Its Associated-Gene <i>MPPED2</i> Are Down-Regulated in Human Thyroid Neoplasias and Act as Tumour Suppressors., Cancers (Basel)


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C11orf46-2:4
5.0 lnc-C11orf46-2:4
5.1 MPPED2-AS1:4
5.2 MPPED2-AS1:9