Transcript: MRPS30-DT:40

Basic information

LNCipedia transcript ID: MRPS30-DT:40 
LNCipedia gene ID: MRPS30-DT
Location (hg38): chr5:44774322-44811125
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4403 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000251141.1|HBMT00001161916.1
Alternative gene names:

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 3.2195 non-coding 
CPAT coding probability 41.42% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MRPS30-DT:40 yes no no no

Available literature

  1. Ghoussaini (2016), Evidence that the 5p12 Variant rs10941679 Confers Susceptibility to Estrogen-Receptor-Positive Breast Cancer through FGF10 and MRPS30 Regulation., Am. J. Hum. Genet.

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-FGF10-3:19
5.0 lnc-FGF10-3:19
5.1 MRPS30-DT:4
5.2 MRPS30-DT:40