Transcript: MRPS30-DT:47

Basic information

LNCipedia transcript ID: MRPS30-DT:47 
LNCipedia gene ID: MRPS30-DT
Location (hg38): chr5:44776988-44809560
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1033 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT101345
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -295.4518 non-coding 
CPAT coding probability 61.92% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MRPS30-DT:47 yes no no no

Available literature

  1. Ghoussaini (2016), Evidence that the 5p12 Variant rs10941679 Confers Susceptibility to Estrogen-Receptor-Positive Breast Cancer through FGF10 and MRPS30 Regulation., Am. J. Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FGF10-3:10
4.0 lnc-FGF10-3:10
4.1 lnc-FGF10-3:10
5.0 lnc-FGF10-3:10
5.1 MRPS30-DT:11
5.2 MRPS30-DT:47