Transcript: MRPS30-DT:50

Basic information

LNCipedia transcript ID: MRPS30-DT:50 
LNCipedia gene ID: MRPS30-DT
RefSeq ID: NR_109863
Location (hg38): chr5:44744328-44808793
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1391 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109863; NR_109863.1
Alternative gene names: BRCAT54


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.4512 non-coding 
CPAT coding probability 3.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MRPS30-DT:50 no no no no

Available literature

  1. Ghoussaini (2016), Evidence that the 5p12 Variant rs10941679 Confers Susceptibility to Estrogen-Receptor-Positive Breast Cancer through FGF10 and MRPS30 Regulation., Am. J. Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FGF10-3:12
4.0 lnc-FGF10-3:12
4.1 lnc-FGF10-3:12
5.0 lnc-FGF10-3:12
5.1 MRPS30-DT:14
5.2 MRPS30-DT:50