Transcript: MRPS30-DT:72

Basic information

LNCipedia transcript ID: MRPS30-DT:72 
HGNC Gene Symbol: MRPS30-DT    
HGNC Full Gene Name: MRPS30 divergent transcript
Ensembl Gene ID: ENSG00000251141
Ensembl Transcript ID: ENST00000508123
Location (hg38): chr5:44775694-44808666
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 572 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000508123.1; RP11-53O19.1-005; OTTHUMT00000367511.1; NONHSAT101343
Alternative gene names: ENSG00000251141.1; RP11-53O19.1; OTTHUMG00000162143.2; ENSG00000251141.5; AC093297.2; MRPS30-DT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.9111 non-coding 
CPAT coding probability 4.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MRPS30-DT:72 no no no no

Available literature

  1. Ghoussaini (2016), Evidence that the 5p12 Variant rs10941679 Confers Susceptibility to Estrogen-Receptor-Positive Breast Cancer through FGF10 and MRPS30 Regulation., Am. J. Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FGF10-3:8
4.0 lnc-FGF10-3:8
4.1 lnc-FGF10-3:8
5.0 lnc-FGF10-3:8
5.1 MRPS30-DT:36
5.2 MRPS30-DT:72