Transcript: MRTFA-AS1:3

Basic information

LNCipedia transcript ID: MRTFA-AS1:3 
HGNC Gene Symbol: MRTFA-AS1    
HGNC Full Gene Name: MRTFA antisense RNA 1
Ensembl Gene ID: ENSG00000232564
Ensembl Transcript ID: ENST00000417123
RefSeq ID: NR_109965
Location (hg38): chr22:40521800-40526707
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1932 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000417123.1; RP4-591N18.2-001; OTTHUMT00000321532.1; NONHSAT086850; NR_109965; NR_109965.1
Alternative gene names: ENSG00000232564.1; RP4-591N18.2; OTTHUMG00000151147.1; ENSG00000232564.3; AL031594.1; LOC101927257


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.1883 non-coding 
CPAT coding probability 0.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MRTFA-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SGSM3-2:1
4.0 lnc-SGSM3-2:1
4.1 lnc-SGSM3-2:1
5.0 lnc-SGSM3-2:1
5.1 MRTFA-AS1:2
5.2 MRTFA-AS1:3