Transcript: MYCNUT:2

Basic information

LNCipedia transcript ID: MYCNUT:2 
LNCipedia gene ID: MYCNUT
RefSeq ID: NR_125783
Location (hg38): chr2:15920399-15936018
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1040 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125783; NR_125783.1
Alternative gene names: lncUSMycN; MYCNUT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -108.2445 non-coding 
CPAT coding probability 0.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MYCNUT:2 no no no no

Available literature

  1. Liu (2014), Effects of a novel long noncoding RNA, lncUSMycN, on N-Myc expression and neuroblastoma progression., J. Natl. Cancer Inst.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MYCN-1:3
4.0 MYCNUT:2
4.1 MYCNUT:2
5.0 MYCNUT:2
5.1 MYCNUT:2
5.2 MYCNUT:2